Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs34425841 chr19:33231619 C/T 5.74E-6 489 30.93 32.47 22.68 KM Plot
PRAD rs34463965 chr8:142205308 A/C 0.000132 490 30.27 31.65 36.77 KM Plot
PRAD rs34486385 chr22:18444290 C/T 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs34495733 chr7:6763641 G/A 3.79E-7 487 31.13 26.7 50.03 KM Plot
PRAD rs34512931 chr11:65224560 A/G 5.24E-5 484 32.13 30.33 18.6 KM Plot
PRAD rs345165 chr17:58208752 C/CT 1.76E-12 488 31.08 30.67 20.27 KM Plot
PRAD rs34522703 chr6:168123856 A/G 3.46E-8 481 31.27 28.07 35.58 KM Plot
PRAD rs34523787 chr10:131802518 T/C 2.45E-6 485 31.3 29.63 29.17 KM Plot
PRAD rs34542871 chr2:241767457 T/C 0.000189 488 29.4 32.7 32.63 KM Plot
PRAD rs34567061 chr2:178804686 G/A 4.45E-5 490 30.73 32.9 20.48 KM Plot
PRAD rs34569554 chr17:62980286 T/C 8.32E-9 490 30.78 31.37 19.63 KM Plot
PRAD rs34577725 chr9:133753195 ATTT/A 0 485 30.33 36.93 17.7 KM Plot
PRAD rs34583353 chr7:43570983 T/G 0.000158 483 31.3 31 20.33 KM Plot
PRAD rs34587028 chr19:53155602 C/T 1.36E-8 491 30.9 30.85 26.13 KM Plot
PRAD rs34596632 chr22:18463254 A/C 2.29E-8 492 30.9 31.43 27.37 KM Plot